PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018792-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 164aa MW: 19208.4 Da PI: 11.0318

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018792-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++k++G g W +++ + g++R++k c++rw++yl NNU_018792-RA 9 KGAWTEEEDILLRKCIKRYGEGEWCKVPLRAGLNRCRKRCRLRWLNYL 56 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.272	1	60	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-20	7	59	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-13	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-14	9	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.59E-21	10	83	IPR009057	Homeodomain-like
CDD	cd00167	3.81E-10	11	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-6	60	83	IPR009057	Homeodomain-like
SMART	SM00717	22	61	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MNGGLGFRKG AWTEEEDILL RKCIKRYGEG EWCKVPLRAG LNRCRKRCRL RWLNYLRPGI 60 NRGEFTLDEV DLIIRLHKLL GNRKTSRKNS KRCKELLQYT VDQQKARLQK KKRKRTPQLR 120 RSKLSGLSLV TSQKVFDGSD HWLILPVADP TSEGGCYEPI RRNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	115	KKRKRT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274761.1	3e-47	PREDICTED: myb-related protein 330-like
TrEMBL	A0A0C7DVT1	9e-42	A0A0C7DVT1_RIBNI; MYB10 protein
TrEMBL	U5GFP3	1e-41	U5GFP3_POPTR; Uncharacterized protein
TrEMBL	A0A0C7DVW0	1e-41	A0A0C7DVW0_9MAGN; MYB10 protein
STRING	POPTR_0005s14470.1	3e-41	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-38	myb domain protein 113